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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_3745_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 81aa MW: 9198.79 Da PI: 10.7524 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 91.4 | 4.6e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n + rqvtfskRr g++KKAeELSvLCdaev viifs tgkl+eyss Neem_3745_f_1 9 KKIDNVTARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFEYSS 59 68***********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 29.562 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.6E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.44E-28 | 1 | 70 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.61E-34 | 2 | 60 | No hit | No description |
PRINTS | PR00404 | 2.7E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.3E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.7E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.7E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 81 aa Download sequence Send to blast |
MAREKIKIKK IDNVTARQVT FSKRRRGLFK KAEELSVLCD AEVGVIIFSA TGKLFEYSSS 60 RSLLHPVLNS AEPFPSKRPY L |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_S | 1e-17 | 1 | 77 | 1 | 79 | Myocyte-specific enhancer factor 2B |
1tqe_R | 1e-17 | 1 | 77 | 1 | 79 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 1e-17 | 1 | 77 | 1 | 79 | Myocyte-specific enhancer factor 2B |
1tqe_P | 1e-17 | 1 | 77 | 1 | 79 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006386424.1 | 3e-35 | hypothetical protein POPTR_0002s10570g, partial | ||||
Refseq | XP_011016930.1 | 6e-34 | PREDICTED: MADS-box protein JOINTLESS | ||||
Swissprot | O82794 | 3e-33 | AGL24_ARATH; MADS-box protein AGL24 | ||||
TrEMBL | U5GPC1 | 3e-35 | U5GPC1_POPTR; Uncharacterized protein (Fragment) | ||||
STRING | POPTR_0002s10570.1 | 8e-35 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM78 | 28 | 413 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24540.1 | 2e-34 | AGAMOUS-like 24 |